PredPhospho predicts phosphorylation sites of protein sequences and their kinases. Please read abstract in the left side, which describe its basic concepts.

We used LIBSVM (ver 2.84) as a classifier.

Please refer to  User's Guide when you don't know how to use PredPhospho.

For kinase nomenclature, please refer to KinBase.

The new features

    When we trained SVMs, we included only human phosphorylated sited sequences

    The nonphosphorylated sites used in the models of SVMs are proven data

    The type of kinase models were increased.

    

Fill a substrate sequence in the following text form. Help

 Input a Protein Sequence

 

Choose kinases that you are interested in. Help

 

Prediction at the Group Level
GROUP AGC TK CMGC CAMK CK1 STE
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Prediction at the Family Level

GROUP

FAMILY

AGC

AKT

GRK

PKA

PKC

RSK

TK

JAKA

PDGFR

SRC

SYK

 

CMGC

CDK

GSK

MAPK

 

CAMK

CAMK2

CAMKL

 

CK1

CK1

 

STE

STE20

 

ATYPICAL

PIKK

 

OTHER

CK2

IKK

 

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Specificity Help


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